- DREAM Challenge data are at https://console.cloud.google.com/storage/browser/public-dream-data/
- in silico Titration
- NA12878 (virtual normal): ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/ERR194147 (SRA ERR194147)
- NS12911 (virtual tumor): http://www.ncbi.nlm.nih.gov/sra/SRX1016818
- SomaticSpike
- These are the original BAM files used for SomaticSpike.
- NA12878 (virtual normal): ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/technical/working/20120117_ceu_trio_b37_decoy/. The file names are CEUTrio.HiSeq.WGS.jaffe.b37_decoy.NA12878.chr*.clean.dedup.recal.20120117.bam
- NA12891 (virtual tumor): ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/technical/working/20120117_ceu_trio_b37_decoy/. The file name is CEUTrio.HiSeq.WGS.b37_decoy.NA12891.clean.dedup.recal.20120117.bam
- If you would like the spiked BAM files, please contact Wenyi Wang at MD Anderson. Her research group provided us with that data set.
- Real data
- CLL1: https://www.ebi.ac.uk/ega/datasets/EGAD00001000023
- COLO829: https://www.ebi.ac.uk/ega/studies/EGAS00000000052
- Intermediate files for the analyses were hosted on a Google Drive that we no longer own. We'll post the new URL when we find a new place to host them. We're aware the original links do not work anymore.